STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pepTPeptidase T; Cleaves the N-terminal amino acid of tripeptides. Belongs to the peptidase M20B family. (408 aa)    
Predicted Functional Partners:
ABC3901
Oligoendopeptidase F.
  
  
 0.696
ABC2732
Xaa-Pro dipeptidase; Belongs to the peptidase M24B family.
  
 
 0.533
ABC1693
Conserved hypothetical protein; Belongs to the GTP cyclohydrolase I type 2/NIF3 family.
  
    0.532
ABC2483
Xaa-Pro dipeptidase.
  
 
 0.532
ABC2020
Oligoendopeptidase F.
  
  
 0.453
pykA
Pyruvate kinase; Belongs to the pyruvate kinase family.
  
  
 0.453
ABC1389
NADH peroxidase; Probable gene remnant. Similar to the N-terminal region of Mesorhizobium loti oxidoreductase of short-chain mlr1899 (278 aa) TR:Q98JK8; locus_tag:ABC1388.
   
    0.438
ABC1842
NADH dehydrogenase.
   
    0.438
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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