STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABC0745Glycerate kinase; Belongs to the glycerate kinase type-1 family. (384 aa)    
Predicted Functional Partners:
ABC0092
2-ketogluconate reductase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
    
 0.924
pgm
2,3-bisphosphoglycerate-independent phosphoglycerate mutase; Essential for rapid growth and for sporulation. Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate.
     
 0.915
dhaS
Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
   
 
 0.902
ABC1244
Conserved hypothetical protein.
     
 0.902
ABC1279
Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
   
 
 0.902
ABC1431
Phosphoglycerate mutase.
     
 0.902
ABC0746
Carbohydrate diacid regulator.
 
  
 0.698
tadA
Cytosine/adenosine deaminase; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family.
 
 
    0.658
ABC0661
H+:gluconate symporter.
 
  
 0.499
pykA
Pyruvate kinase; Belongs to the pyruvate kinase family.
     
 0.479
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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