Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABC0763L-alanoyl-D-glutamate peptidase. (200 aa)    
Predicted Functional Partners:
ABC3287
Conserved hypothetical protein.
  
     0.619
ABC0762
Transcriptional activator.
 
     0.580
ABC0764
Amino acid transporter.
       0.527
ABC1244
Conserved hypothetical protein.
  
     0.489
ABC2166
Site-specific recombinase.
  
     0.488
ABC1185
Threonine efflux protein.
  
     0.465
ABC3339
Conserved hypothetical protein.
 
    0.461
ABC2118
Conserved hypothetical protein.
 
     0.460
ABC3363
Conserved hypothetical protein.
  
     0.410
ABC2684
Conserved hypothetical protein.
  
     0.406
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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