dppB protein (Bacillus clausii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

dppB

Dipeptide ABC transporter permease. (307 aa)

Predicted Functional Partners:

dppC

0.993

dppE

0.992

dppD

0.991

ABC0783

0.893

dppA

0.869

ABC4064

0.838

ABC1608

0.837

ABC0566

0.836

ABC2412

0.836

ABC3659

0.836

Your Current Organism:

Bacillus clausii

NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABC0566	ABC0783	ABC0566	ABC0783	Oligopeptide ABC transporter permease.	Oligopeptide ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.	0.712
ABC0566	dppB	ABC0566	ABC0777	Oligopeptide ABC transporter permease.	Dipeptide ABC transporter permease.	0.836
ABC0566	dppD	ABC0566	ABC0779	Oligopeptide ABC transporter permease.	Dipeptide ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.	0.838
ABC0566	dppE	ABC0566	ABC0780	Oligopeptide ABC transporter permease.	Dipeptide ABC transporter substrate-binding protein.	0.560
ABC0783	ABC0566	ABC0783	ABC0566	Oligopeptide ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.	Oligopeptide ABC transporter permease.	0.712
ABC0783	ABC1608	ABC0783	ABC1608	Oligopeptide ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.	Oligopeptide ABC transporter permease.	0.686
ABC0783	ABC2412	ABC0783	ABC2412	Oligopeptide ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.	Oligopeptide ABC transporter permease.	0.592
ABC0783	ABC3659	ABC0783	ABC3659	Oligopeptide ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.	Oligopeptide ABC transporter permease.	0.659
ABC0783	ABC4064	ABC0783	ABC4064	Oligopeptide ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.	Oligopeptide ABC transporter permease.	0.768
ABC0783	dppA	ABC0783	ABC0776	Oligopeptide ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.	D-alanyl-aminopeptidase.	0.604
ABC0783	dppB	ABC0783	ABC0777	Oligopeptide ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.	Dipeptide ABC transporter permease.	0.893
ABC0783	dppC	ABC0783	ABC0778	Oligopeptide ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.	Dipeptide ABC transporter permease.	0.940
ABC0783	dppD	ABC0783	ABC0779	Oligopeptide ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.	Dipeptide ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.	0.665
ABC0783	dppE	ABC0783	ABC0780	Oligopeptide ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.	Dipeptide ABC transporter substrate-binding protein.	0.866
ABC1608	ABC0783	ABC1608	ABC0783	Oligopeptide ABC transporter permease.	Oligopeptide ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.	0.686
ABC1608	dppB	ABC1608	ABC0777	Oligopeptide ABC transporter permease.	Dipeptide ABC transporter permease.	0.837
ABC1608	dppD	ABC1608	ABC0779	Oligopeptide ABC transporter permease.	Dipeptide ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.	0.769
ABC1608	dppE	ABC1608	ABC0780	Oligopeptide ABC transporter permease.	Dipeptide ABC transporter substrate-binding protein.	0.546
ABC2412	ABC0783	ABC2412	ABC0783	Oligopeptide ABC transporter permease.	Oligopeptide ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.	0.592
ABC2412	dppB	ABC2412	ABC0777	Oligopeptide ABC transporter permease.	Dipeptide ABC transporter permease.	0.836