dppC protein (Bacillus clausii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

dppC

Dipeptide ABC transporter permease. (313 aa)

Predicted Functional Partners:

dppD

0.995

dppB

0.993

dppE

0.991

ABC1607

0.946

ABC0783

0.940

ABC4063

0.920

ABC1238

0.898

ABC3658

0.894

ABC0567

0.889

ABC2416

0.886

Your Current Organism:

Bacillus clausii

NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABC0567	dppB	ABC0567	ABC0777	Oligopeptide ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.	Dipeptide ABC transporter permease.	0.774
ABC0567	dppC	ABC0567	ABC0778	Oligopeptide ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.	Dipeptide ABC transporter permease.	0.889
ABC0567	dppE	ABC0567	ABC0780	Oligopeptide ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.	Dipeptide ABC transporter substrate-binding protein.	0.519
ABC0783	dppB	ABC0783	ABC0777	Oligopeptide ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.	Dipeptide ABC transporter permease.	0.893
ABC0783	dppC	ABC0783	ABC0778	Oligopeptide ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.	Dipeptide ABC transporter permease.	0.940
ABC0783	dppD	ABC0783	ABC0779	Oligopeptide ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.	Dipeptide ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.	0.665
ABC0783	dppE	ABC0783	ABC0780	Oligopeptide ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.	Dipeptide ABC transporter substrate-binding protein.	0.866
ABC1238	dppB	ABC1238	ABC0777	Oligopeptide ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.	Dipeptide ABC transporter permease.	0.765
ABC1238	dppC	ABC1238	ABC0778	Oligopeptide ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.	Dipeptide ABC transporter permease.	0.898
ABC1238	dppE	ABC1238	ABC0780	Oligopeptide ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.	Dipeptide ABC transporter substrate-binding protein.	0.511
ABC1607	dppB	ABC1607	ABC0777	Oligopeptide ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.	Dipeptide ABC transporter permease.	0.783
ABC1607	dppC	ABC1607	ABC0778	Oligopeptide ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.	Dipeptide ABC transporter permease.	0.946
ABC1607	dppE	ABC1607	ABC0780	Oligopeptide ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.	Dipeptide ABC transporter substrate-binding protein.	0.471
ABC2416	dppB	ABC2416	ABC0777	Oligopeptide ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.	Dipeptide ABC transporter permease.	0.750
ABC2416	dppC	ABC2416	ABC0778	Oligopeptide ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.	Dipeptide ABC transporter permease.	0.886
ABC2416	dppE	ABC2416	ABC0780	Oligopeptide ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.	Dipeptide ABC transporter substrate-binding protein.	0.480
ABC3658	dppB	ABC3658	ABC0777	Oligopeptide ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.	Dipeptide ABC transporter permease.	0.744
ABC3658	dppC	ABC3658	ABC0778	Oligopeptide ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.	Dipeptide ABC transporter permease.	0.894
ABC3658	dppE	ABC3658	ABC0780	Oligopeptide ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.	Dipeptide ABC transporter substrate-binding protein.	0.459
ABC4063	dppB	ABC4063	ABC0777	Oligopeptide ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.	Dipeptide ABC transporter permease.	0.782