STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABC0781Muramoyltetrapeptide carboxypeptidase. (312 aa)    
Predicted Functional Partners:
ABC0782
Cell wall-associated hydrolase.
 
  
 0.871
dacC
D-alanyl-D-alanine carboxypeptidase.
 
  
 0.820
dppA
D-alanyl-aminopeptidase.
 
    0.807
ABC0783
Oligopeptide ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.
  
  
 0.802
dppE
Dipeptide ABC transporter substrate-binding protein.
 
  
 0.700
dppB
Dipeptide ABC transporter permease.
  
    0.638
dppC
Dipeptide ABC transporter permease.
  
    0.635
dppD
Dipeptide ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.
  
    0.591
ABC2815
N-acetylmuramoyl-L-alanine amidase.
 
  
 0.584
ABC1575
Penicillin binding protein.
 
     0.515
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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