Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ABC0783Oligopeptide ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily. (332 aa)    
Predicted Functional Partners:
dppC
Dipeptide ABC transporter permease.
 
 0.947
dppB
Dipeptide ABC transporter permease.
 
 
 0.903
dppE
Dipeptide ABC transporter substrate-binding protein.
 
  
 0.878
ABC0782
Cell wall-associated hydrolase.
  
  
 0.861
ABC0781
Muramoyltetrapeptide carboxypeptidase.
  
  
 0.821
ABC4064
Oligopeptide ABC transporter permease.
 
 0.805
ABC0566
Oligopeptide ABC transporter permease.
 
 0.744
ABC1242
Oligopeptide ABC transporter permease.
 
 0.738
ABC0032
Oligopeptide ABC transporter permease.
 
 0.726
ABC1608
Oligopeptide ABC transporter permease.
 
 0.721
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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