STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABC0794Conserved hypothetical protein. (283 aa)    
Predicted Functional Partners:
ABC1786
Conserved hypothetical protein.
  
    0.648
ABC3956
General stress protein 17M.
 
  
 0.612
ABC1991
Proline/glycine betaine ABC transporter permease.
  
    0.578
opuCC
Proline/glycine betaine ABC transporter substrate-binding protein.
  
    0.577
ABC3511
Conserved hypothetical protein.
  
     0.561
rsbR
Positive regulator of sigma-B activity.
  
    0.538
rsbS
Negative regulator of sigma-B activity.
  
    0.538
ABC3461
Anti-anti-sigma regulatory factor.
  
    0.532
ABC0795
Sugar phosphate isomerases/epimerase.
       0.509
ctaC
Cytochrome caa3 oxidase subunit II CoxB; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
  
 
 0.497
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.