STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABC0801D-alanyl-D-alanine carboxypeptidase. (250 aa)    
Predicted Functional Partners:
dacB
D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family.
     
 0.911
dacA
D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family.
    
 0.910
ABC1175
D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family.
     
 0.910
dacF
D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family.
    
 0.910
pbpF
Penicillin-binding protein.
     
 0.905
ponA
Penicillin-binding protein 1A/1B; Penicillin-sensitive transpeptidase, PBP1.
     
 0.905
ABC2759
Penicillin-binding protein 1A.
     
 0.905
ABC0802
Sulfatase; Belongs to the LTA synthase family.
       0.472
deoD
Purine-nucleoside phosphorylase.
  
    0.454
ddlA
D-alanine--D-alanine ligase A; Cell wall formation.
 
   
 0.414
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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