STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rsbTPositive regulator of sigma-B activity. (143 aa)    
Predicted Functional Partners:
rsbS
Negative regulator of sigma-B activity.
 
 
 0.999
rsbX
Indirect negative regulator of sigma-B activity.
 
 
 0.987
rsbR
Positive regulator of sigma-B activity.
 
 
 0.985
rsbU
Indirect positive regulator of sigma-B activity.
 
 
 0.983
ABC3461
Anti-anti-sigma regulatory factor.
 
 
 0.936
rsbW
Anti-sigma B factor; Negative regulator of sigma-B activity. Phosphorylates and inactivates its specific antagonist protein, RsbV. Upon phosphorylation of RsbV, RsbW is released and binds to sigma-B, thereby blocking its ability to form an RNA polymerase holoenzyme (E-sigma-B).
 
   
 0.869
sigB
DNA-directed RNA polymerase general stress sigma factor sigma-B; Belongs to the sigma-70 factor family.
 
 
 0.846
rsbV
Positive regulator of sigma-B activity; Belongs to the anti-sigma-factor antagonist family.
  
 
 0.836
ABC1981
Conserved hypothetical protein.
  
 
 0.701
motA
Motility protein A.
   
    0.693
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.