STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABC0834Lactoylglutathione lyase. (123 aa)    
Predicted Functional Partners:
arsR
ArsR family transcriptional regulator.
  
  
 0.971
arsC
Arsenate reductase; Catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)].
  
  
 0.969
arsB
Arsenite efflux pump.
  
  
 0.950
ABC0835
ArsR family transcriptional regulator.
  
  
 0.867
ABC0833
Hypothetical protein.
       0.658
ABC3788
NADH-dependent flavin oxidoreductase.
  
    0.640
ABC0836
Arsenic efflux pump; Involved in arsenical resistance. Thought to form the channel of an arsenite pump; Belongs to the ArsB family.
       0.540
birA
Bifunctional biotin biosynthesis protein BirA; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.
  
    0.468
sdhC
Succinate dehydrogenase cytochrome b558 subunit.
   
    0.439
ABC3767
NAD(P)H nitroreductase.
  
  
 0.425
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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