Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABC0839Conserved hypothetical protein. (286 aa)    
Predicted Functional Partners:
ABC3905
4-oxalocrotonate tautomerase.
    
 0.930
ABC0586
Tautomerase; Belongs to the 4-oxalocrotonate tautomerase family.
    
 0.911
ABC3003
Conserved hypothetical protein.
 
  
 0.805
ABC2026
Conserved hypothetical protein.
 
  
 0.748
ABC2025
Esterase.
 
   
 0.690
ABC4022
Glyoxylase.
 
  
 0.681
ABC1713
Oxidoreductase.
 
    0.678
ABC0840
GntR family transcriptional regulator.
       0.425
ABC0838
Oxalate decarboxylase.
       0.423
ABC0785
Conserved hypothetical protein.
       0.411
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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