STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABC0848ArsR family transcriptional regulator. (109 aa)    
Predicted Functional Partners:
ABC0847
Conserved hypothetical protein.
  
 0.989
ABC3712
Conserved hypothetical protein; Immunity protein that provides protection for the cell against the toxic effects of SDP, its own SdpC-derived killing factor, and that functions as a receptor/signal transduction protein as well. Once SDP accumulates in the extracellular milieu, SdpI binds to SDP, causing sequestration of SdpR at the bacterial membrane.
 
  
 0.809
ABC4001
Conserved hypothetical protein.
 
  
 0.677
ABC0845
Oxidoreductase.
 
     0.605
ABC1420
Hypothetical protein.
  
    0.530
ABC0846
Excinuclease ABC subunit A.
       0.515
ABC0369
AraC/XylS family transcriptional regulator.
  
    0.497
ABC1419
IS493 family transposase.
 
    0.497
ABC0849
Conserved hypothetical protein.
       0.458
ABC4053
Conserved hypothetical protein.
  
     0.441
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.