STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABC0901Conserved hypothetical protein. (208 aa)    
Predicted Functional Partners:
ABC0900
Formate dehydrogenase alpha subunit.
 
  
 0.980
narQ
Formate dehydrogenase accessory protein FdhD; Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH. Belongs to the FdhD family.
 
  
 0.870
nasC
Assimilatory nitrate reductase catalytic subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
  
 0.673
kapB
Kinase-associated lipoprotein B.
  
     0.646
ABC0899
Formate/nitrite transporter.
  
  
 0.615
ABC2728
Conserved hypothetical protein.
  
     0.528
ABC2163
Conserved hypothetical protein.
  
     0.508
ABC1389
NADH peroxidase; Probable gene remnant. Similar to the N-terminal region of Mesorhizobium loti oxidoreductase of short-chain mlr1899 (278 aa) TR:Q98JK8; locus_tag:ABC1388.
  
    0.487
ABC1842
NADH dehydrogenase.
  
    0.487
ABC3875
NADH oxidase.
  
    0.487
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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