Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABC0903Conserved hypothetical protein. (169 aa)    
Predicted Functional Partners:
ABC3562
Conserved hypothetical protein.
  
     0.774
ABC2899
Hypothetical protein.
  
     0.708
ABC1971
Conserved hypothetical protein.
 
     0.554
ABC1341
Phage-related tail protein.
  
     0.506
ABC1172
Multidrug ABC transporter permease.
 
     0.500
ABC1014
Conserved hypothetical protein.
  
     0.473
ABC0904
Hypothetical protein.
       0.448
ABC0987
Lipase.
  
     0.432
pyrDII
Dihydroorotate dehydrogenase electron transfer subunit; Responsible for channeling the electrons from the oxidation of dihydroorotate from the FMN redox center in the PyrD type B subunit to the ultimate electron acceptor NAD(+).
   
 
 0.416
ABC3493
Spore germination protein KC.
  
     0.407
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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