STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABC0908HAD superfamily hydrolase. (274 aa)    
Predicted Functional Partners:
ABC3896
Conserved hypothetical protein.
 
     0.651
ABC0593
Xre family transcriptional regulator.
  
     0.606
ABC3787
Butirosin biosynthesis protein BtrG.
  
     0.598
ABC2561
Conserved hypothetical protein.
 
    0.520
ABC2738
Hypothetical protein.
  
     0.517
ABC0909
Conserved hypothetical protein.
       0.494
ABC0906
Conserved hypothetical protein.
  
    0.478
csbB
Stress response protein.
     
 0.472
ABC0905
Conserved hypothetical protein.
       0.467
ABC2093
Phage-related protein.
  
     0.461
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.