cwlC protein (Bacillus clausii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

cwlC

N-acetylmuramoyl-L-alanine amidase. (256 aa)

Predicted Functional Partners:

ftsA

0.895

pbpG

0.808

pbpF

0.805

divIB

0.804

ABC2759

0.803

ponA

0.795

pbpD

0.761

pbpC

0.710

spoIID

0.701

spoIIQ

0.694

Your Current Organism:

Bacillus clausii

NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABC2759	cwlC	ABC2759	ABC0927	Penicillin-binding protein 1A.	N-acetylmuramoyl-L-alanine amidase.	0.803
ABC2759	ftsA	ABC2759	ABC2354	Penicillin-binding protein 1A.	Cell division initiation protein FtsA; Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring. Belongs to the FtsA/MreB family.	0.503
ABC2759	pbpC	ABC2759	ABC0929	Penicillin-binding protein 1A.	Penicillin-binding protein 3.	0.450
ABC2759	pbpF	ABC2759	ABC1537	Penicillin-binding protein 1A.	Penicillin-binding protein.	0.926
ABC2759	ponA	ABC2759	ABC2055	Penicillin-binding protein 1A.	Penicillin-binding protein 1A/1B; Penicillin-sensitive transpeptidase, PBP1.	0.927
cwlC	ABC2759	ABC0927	ABC2759	N-acetylmuramoyl-L-alanine amidase.	Penicillin-binding protein 1A.	0.803
cwlC	divIB	ABC0927	ABC2355	N-acetylmuramoyl-L-alanine amidase.	Cell division initiation protein FtsQ; Cell division protein that may be involved in stabilizing or promoting the assembly of the division complex; Belongs to the FtsQ/DivIB family. DivIB subfamily.	0.804
cwlC	ftsA	ABC0927	ABC2354	N-acetylmuramoyl-L-alanine amidase.	Cell division initiation protein FtsA; Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring. Belongs to the FtsA/MreB family.	0.895
cwlC	pbpC	ABC0927	ABC0929	N-acetylmuramoyl-L-alanine amidase.	Penicillin-binding protein 3.	0.710
cwlC	pbpD	ABC0927	ABC1473	N-acetylmuramoyl-L-alanine amidase.	Penicillin-binding protein.	0.761
cwlC	pbpF	ABC0927	ABC1537	N-acetylmuramoyl-L-alanine amidase.	Penicillin-binding protein.	0.805
cwlC	pbpG	ABC0927	ABC3899	N-acetylmuramoyl-L-alanine amidase.	Penicillin-binding protein.	0.808
cwlC	ponA	ABC0927	ABC2055	N-acetylmuramoyl-L-alanine amidase.	Penicillin-binding protein 1A/1B; Penicillin-sensitive transpeptidase, PBP1.	0.795
cwlC	spoIID	ABC0927	ABC3846	N-acetylmuramoyl-L-alanine amidase.	Stage II sporulation protein D.	0.701
cwlC	spoIIQ	ABC0927	ABC3845	N-acetylmuramoyl-L-alanine amidase.	Stage II sporulation protein Q.	0.694
divIB	cwlC	ABC2355	ABC0927	Cell division initiation protein FtsQ; Cell division protein that may be involved in stabilizing or promoting the assembly of the division complex; Belongs to the FtsQ/DivIB family. DivIB subfamily.	N-acetylmuramoyl-L-alanine amidase.	0.804
divIB	ftsA	ABC2355	ABC2354	Cell division initiation protein FtsQ; Cell division protein that may be involved in stabilizing or promoting the assembly of the division complex; Belongs to the FtsQ/DivIB family. DivIB subfamily.	Cell division initiation protein FtsA; Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring. Belongs to the FtsA/MreB family.	0.956
divIB	pbpC	ABC2355	ABC0929	Cell division initiation protein FtsQ; Cell division protein that may be involved in stabilizing or promoting the assembly of the division complex; Belongs to the FtsQ/DivIB family. DivIB subfamily.	Penicillin-binding protein 3.	0.731
ftsA	ABC2759	ABC2354	ABC2759	Cell division initiation protein FtsA; Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring. Belongs to the FtsA/MreB family.	Penicillin-binding protein 1A.	0.503
ftsA	cwlC	ABC2354	ABC0927	Cell division initiation protein FtsA; Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring. Belongs to the FtsA/MreB family.	N-acetylmuramoyl-L-alanine amidase.	0.895