Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABC0940LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family. (311 aa)    
Predicted Functional Partners:
ABC3400
LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.773
ABC3189
LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.771
ABC1803
LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.763
ABC0939
Conserved hypothetical protein.
 
     0.634
ABC0941
Conserved hypothetical protein.
       0.509
gltA
Glutamate synthase large subunit.
     
 0.509
ABC1123
Conserved hypothetical protein.
 
  
 0.416
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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