STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABC0961Lipoprotein. (167 aa)    
Predicted Functional Partners:
ABC1183
Spore coat protein.
  
  
 0.823
ABC0962
Phosphoesterase.
 
     0.619
gerAB
Spore germination protein.
  
     0.605
ABC2899
Hypothetical protein.
  
     0.582
ABC2022
Spore germination protein.
  
     0.567
gerKB
Spore germination protein KB.
  
     0.560
ABC0960
Conserved hypothetical protein.
       0.553
gerAC
Spore germination protein.
  
     0.543
gerBC
Spore germination protein.
  
     0.534
spoIIE
Serine phosphatase stage II sporulation protein E.
  
     0.498
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.