STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABC0978GntR family transcriptional regulator. (272 aa)    
Predicted Functional Partners:
ABC4081
GntR family transcriptional regulator.
 
  
 0.758
ABC0974
L-lactate permease; Transports L-lactate across the membrane. Can also transport D-lactate and glycolate; Belongs to the lactate permease family.
 
  
 0.638
ABC0604
GntR family transcriptional regulator.
 
  
 0.623
ABC0491
GntR family transcriptional regulator.
  
    0.618
ABC1486
GntR family transcriptional regulator.
  
    0.608
ABC1488
GntR family transcriptional regulator.
  
    0.600
lutC
Conserved hypothetical protein; Is involved in L-lactate degradation and allows cells to grow with lactate as the sole carbon source.
 
   
 0.597
lutB
Iron-sulfur protein; Is involved in L-lactate degradation and allows cells to grow with lactate as the sole carbon source. Has probably a role as an electron transporter during oxidation of L-lactate.
 
   
 0.579
treR
GntR family transcriptional repressor of trehalose operon.
  
    0.571
ABC0645
GntR family transcriptional regulator.
  
    0.564
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.