Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
gbsBAlcohol dehydrogenase. (402 aa)    
Predicted Functional Partners:
gbsA
Betaine aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
 0.988
opuCC
Proline/glycine betaine ABC transporter substrate-binding protein.
      
 0.577
adhA
Alcohol dehydrogenase.
  
 
 0.567
ABC1851
Repressor protein.
   
  
 0.552
opuAA
Glycine betaine ABC transporter ATP-binding protein.
     
 0.547
opuAB
Glycine betaine ABC transporter permease.
     
 0.546
treA
Trehalose-6-phosphate hydrolase.
      
 0.546
ABC0981
Transcriptional regulator; Belongs to the GbsR family.
     
 0.449
opuD
Glycine betaine transporter; Belongs to the BCCT transporter (TC 2.A.15) family.
   
  
 0.441
pckA
Phosphoenolpyruvate carboxykinase [ATP]; Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA.
   
  
 0.436
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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