STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gbsABetaine aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. (491 aa)    
Predicted Functional Partners:
gbsB
Alcohol dehydrogenase.
  
 0.988
fmt
methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family.
 
      0.768
ABC0963
Proline oxidase.
 
 
 0.717
opuD
Glycine betaine transporter; Belongs to the BCCT transporter (TC 2.A.15) family.
   
  
 0.551
opuCC
Proline/glycine betaine ABC transporter substrate-binding protein.
   
  
 0.550
treA
Trehalose-6-phosphate hydrolase.
     
 0.536
opuAB
Glycine betaine ABC transporter permease.
      
 0.530
ABC0981
Transcriptional regulator; Belongs to the GbsR family.
 
   
 0.520
ABC2990
3-hydroxyacyl-CoA dehydrogenase.
  
 0.496
mtaD
Chlorohydrolase; Catalyzes the deamination of 5-methylthioadenosine and S- adenosyl-L-homocysteine into 5-methylthioinosine and S-inosyl-L- homocysteine, respectively. Is also able to deaminate adenosine. Belongs to the metallo-dependent hydrolases superfamily. MTA/SAH deaminase family.
   
  
 0.489
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.