Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABC0981Transcriptional regulator; Belongs to the GbsR family. (188 aa)    
Predicted Functional Partners:
ABC0982
Glycine betaine ABC transporter substrate-binding protein.
 
   
 0.604
gbsA
Betaine aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
 
   
 0.520
ABC4109
Conserved hypothetical protein.
  
     0.475
ABC1712
Conserved hypothetical protein.
  
     0.461
gbsB
Alcohol dehydrogenase.
     
 0.449
ABC2421
Lipoprotein.
  
     0.444
ABC3729
Conserved hypothetical protein.
  
     0.432
ABC1786
Conserved hypothetical protein.
  
     0.428
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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