STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABC1070Transcriptional regulator; Belongs to the GbsR family. (180 aa)    
Predicted Functional Partners:
ABC1712
Conserved hypothetical protein.
  
     0.642
opuAC
Glycine betaine ABC transporter substrate-binding protein.
 
   
 0.625
opuAA
Glycine betaine ABC transporter ATP-binding protein.
 
    0.605
ABC2421
Lipoprotein.
  
     0.593
ABC4109
Conserved hypothetical protein.
  
     0.590
opuAB
Glycine betaine ABC transporter permease.
 
     0.580
ABC2529
Conserved hypothetical protein.
  
     0.495
ABC1786
Conserved hypothetical protein.
  
     0.482
tlp
Conserved hypothetical protein; Belongs to the Tlp family.
  
     0.461
ABC0808
Conserved hypothetical protein.
  
     0.433
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.