STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABC1093Hypothetical protein. (180 aa)    
Predicted Functional Partners:
flgC
Flagellar basal-body rod protein FlgC; Belongs to the flagella basal body rod proteins family.
   
   0.741
ABC1090
Sugar ABC transporter ATP-binding protein.
       0.705
ABC1091
Sugar ABC transporter permease; Belongs to the binding-protein-dependent transport system permease family.
       0.705
ABC1092
Sugar ABC transporter permease; Belongs to the binding-protein-dependent transport system permease family.
       0.705
fliE
Flagellar hook-basal body complex protein FliE.
   
 
 0.591
ABC2002
Conserved hypothetical protein.
  
   0.542
ABC3082
Flagellar protein.
  
   0.542
fliF
Flagellar M-ring protein FliF; The M ring may be actively involved in energy transduction. Belongs to the FliF family.
   
 
 0.541
ABC1089
Sugar ABC transporter substrate-binding protein.
     
 0.538
ABC0204
Conserved hypothetical protein.
   
  
 0.507
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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