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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABC1123Conserved hypothetical protein. (283 aa)    
Predicted Functional Partners:
ABC0378
AraC/XylS family transcriptional regulator.
 
 
0.633
ABC3285
AraC/XylS family transcriptional regulator.
 
 
0.629
ABC1122
2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase.
 
  
 0.562
ABC1124
C4-dicarboxylate transport system substrate-binding protein.
       0.549
ABC1125
C4-dicarboxylate transport system permease small protein.
       0.549
ABC1126
C4-dicarboxylate transport system permease large protein.
       0.549
ABC3488
AraC/XylS family transcriptional regulator.
 
 
0.513
ABC0553
AraC/XylS family transcriptional regulator.
 
 
0.512
ABC0684
AraC/XylS family transcriptional regulator.
 
 
0.512
ABC1456
AraC/XylS family transcriptional regulator.
 
 
0.512
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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