STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABC1126C4-dicarboxylate transport system permease large protein. (427 aa)    
Predicted Functional Partners:
ABC1125
C4-dicarboxylate transport system permease small protein.
 
   0.960
ABC1124
C4-dicarboxylate transport system substrate-binding protein.
 
    0.953
ABC4078
C4-dicarboxylate transport system permease small protein.
 
   0.841
ABC0440
C4-dicarboxylate transport system permease small protein.
 
   0.832
ABC0300
C4-dicarboxylate transport system permease small protein.
 
   0.814
ABC3623
C4-dicarboxylate transport system substrate-binding protein.
    0.811
ABC0301
C4-dicarboxylate transport system substrate-binding protein.
 
    0.809
ABC4046
TRAP-type transport system substrate-binding protein.
 
    0.806
ABC4079
C4-dicarboxylate transport system substrate-binding protein.
 
    0.806
ABC3357
C4-dicarboxylate transport system substrate-binding protein.
 
    0.804
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.