STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABC1136Polysaccharide ABC transporter permease. (304 aa)    
Predicted Functional Partners:
ABC1135
Polysaccharide ABC transporter permease.
 
 
 0.988
ABC1137
Polysaccharide ABC transporter substrate-binding protein.
 
   0.964
ABC0361
Polysaccharide ABC transporter permease.
 
 
 0.957
ABC0556
Sugar ABC transporter permease.
 
 
 0.957
ABC0727
Polysaccharide ABC transporter permease.
 
 
 0.957
ABC3119
Sugar ABC transporter permease.
 
 
 0.957
ABC1146
Sugar ABC transporter permease.
  
  
 
0.912
ABC3117
Sugar ABC transporter substrate-binding protein.
 
   0.840
ABC0358
Conserved hypothetical protein.
 
   0.837
ABC1144
Sugar ABC transporter substrate-binding protein.
 
 
 0.812
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.