STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABC1138Conserved hypothetical protein. (782 aa)    
Predicted Functional Partners:
xsa
alpha-L-arabinofuranosidase.
 
   
 0.634
ABC1137
Polysaccharide ABC transporter substrate-binding protein.
 
     0.604
ABC0393
Conserved hypothetical protein.
  
 
 
 0.603
ABC3274
Unsaturated glucuronyl hydrolase.
 
   
 0.600
ABC0320
Mannan endo-1,4-beta-mannosidase; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
  
 
 
 0.593
ABC1139
Nucleoside-diphosphate-sugar epimerase.
  
  
 0.584
ABC0555
Alpha-glucuronidase; Belongs to the glycosyl hydrolase 67 family.
  
     0.579
ABC3062
Carboxyl-terminal processing protease; Belongs to the peptidase S41A family.
 
   0.537
ABC1709
Conserved hypothetical protein.
    
 
 0.521
ABC1136
Polysaccharide ABC transporter permease.
 
     0.519
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.