Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABC1143AraC/XylS family transcriptional regulator. (765 aa)    
Predicted Functional Partners:
ABC1144
Sugar ABC transporter substrate-binding protein.
 
   
 0.874
ABC1147
Conserved hypothetical protein.
 
     0.754
ABC1142
Transcriptional regulator.
 
  
0.701
ABC1146
Sugar ABC transporter permease.
 
     0.635
ABC1141
Pectate lyase.
 
     0.627
lplB
Sugar ABC transporter permease.
 
     0.616
ABC3475
AraC/XylS family transcriptional regulator.
  
     0.594
ABC1137
Polysaccharide ABC transporter substrate-binding protein.
  
     0.544
ABC1133
Two-component sensor histidine kinase.
 
     0.475
ABC1151
Conserved hypothetical protein.
 
     0.456
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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