STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABC1144Sugar ABC transporter substrate-binding protein. (504 aa)    
Predicted Functional Partners:
ABC1146
Sugar ABC transporter permease.
 
 
 0.925
lplB
Sugar ABC transporter permease.
 
  
 0.901
ABC1143
AraC/XylS family transcriptional regulator.
 
   
 0.872
ABC1147
Conserved hypothetical protein.
 
     0.836
ABC1136
Polysaccharide ABC transporter permease.
 
 
 0.815
ABC0557
Sugar ABC transporter permease.
 
 
 0.810
ABC1135
Polysaccharide ABC transporter permease.
 
  
 0.786
ABC0556
Sugar ABC transporter permease.
 
  
 0.764
ABC3118
Sugar ABC transporter permease.
 
 
 0.758
ABC0727
Polysaccharide ABC transporter permease.
 
  
 0.757
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.