Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABC1144Sugar ABC transporter substrate-binding protein. (504 aa)    
Predicted Functional Partners:
ABC1146
Sugar ABC transporter permease.
 
 
 0.931
lplB
Sugar ABC transporter permease.
 
  
 0.909
ABC1143
AraC/XylS family transcriptional regulator.
 
   
 0.874
ABC1147
Conserved hypothetical protein.
 
     0.838
ABC1136
Polysaccharide ABC transporter permease.
 
 
 0.812
ABC0557
Sugar ABC transporter permease.
 
 
 0.808
ABC1135
Polysaccharide ABC transporter permease.
 
  
 0.804
ABC0556
Sugar ABC transporter permease.
 
  
 0.778
ABC0727
Polysaccharide ABC transporter permease.
 
  
 0.778
ABC3119
Sugar ABC transporter permease.
 
  
 0.778
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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