Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
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[Homology]
Score
lplBSugar ABC transporter permease. (319 aa)    
Predicted Functional Partners:
ABC1146
Sugar ABC transporter permease.
 
  
 0.947
ABC1144
Sugar ABC transporter substrate-binding protein.
 
  
 0.909
ABC1135
Polysaccharide ABC transporter permease.
  
  
 
0.906
ABC0557
Sugar ABC transporter permease.
 
  
 0.799
ABC3118
Sugar ABC transporter permease.
 
  
 0.799
ABC0362
Polysaccharide ABC transporter permease.
 
  
 0.796
ABC1136
Polysaccharide ABC transporter permease.
 
  
 0.796
ABC3117
Sugar ABC transporter substrate-binding protein.
 
    0.791
ABC0728
Polysaccharide ABC transporter permease.
 
    0.790
ABC0558
Sugar ABC transporter substrate-binding protein.
 
  
 0.787
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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