STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABC1148Xylosidase/arabinosidase; alpha-L-arabinofuranosidase; Belongs to the glycosyl hydrolase 43 family. (523 aa)    
Predicted Functional Partners:
xynB
Xylan 1,4-beta-xylosidase; Belongs to the glycosyl hydrolase 43 family.
  
  
 
0.917
araA
L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
 
 
 0.913
ABC1149
Conserved hypothetical protein.
   
 0.883
uxaC
Uronate isomerase.
 
  
 0.852
ABC1152
Oxidoreductase.
 
     0.819
ABC1147
Conserved hypothetical protein.
     
 0.810
ABC1151
Conserved hypothetical protein.
 
     0.810
ABC1146
Sugar ABC transporter permease.
  
    0.803
ABC1150
Conserved hypothetical protein.
       0.796
uxaA
Altronate hydrolase.
       0.783
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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