STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABC1178Agmatinase; Belongs to the arginase family. (317 aa)    
Predicted Functional Partners:
speE
Spermidine synthase; Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy-AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine.
  
 
 0.936
speA
Arginine decarboxylase.
 
 
 0.925
speB
Agmatinase; Belongs to the arginase family.
  
  
 
0.924
ABC1179
Conserved hypothetical protein.
       0.623
mntH
Manganese transporter.
  
  
 0.615
hutH
Histidine ammonia-lyase; Belongs to the PAL/histidase family.
 
  
 0.600
ABC0654
Hypothetical protein.
 
 
 0.475
ABC1868
5,10-methylenetetrahydrofolate reductase.
  
  
 0.469
ABC2511
Spore coat protein.
  
     0.460
ABC1177
Two-component response regulator.
  
    0.459
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
Server load: low (26%) [HD]