STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABC1212Conserved hypothetical protein. (641 aa)    
Predicted Functional Partners:
ABC1213
Sugar ABC transporter substrate-binding protein.
 
     0.809
xsa
alpha-L-arabinofuranosidase.
 
   
 0.795
abfA
alpha-L-arabinofuranosidase.
 
   
 0.791
ABC1214
Sugar ABC transporter permease.
       0.710
ABC1215
Sugar ABC transporter permease.
       0.697
ABC1211
AraC/XylS family transcriptional regulator.
 
     0.689
araA
L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
 
    0.598
ABC3756
Beta-galactosidase; Belongs to the glycosyl hydrolase 2 family.
 
     0.597
ABC1138
Conserved hypothetical protein.
  
     0.519
ABC1132
Alpha-glucosidase; Belongs to the glycosyl hydrolase 31 family.
 
     0.515
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.