Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ABC1213Sugar ABC transporter substrate-binding protein. (452 aa)    
Predicted Functional Partners:
ABC1214
Sugar ABC transporter permease.
 
  0.992
ABC1215
Sugar ABC transporter permease.
 
   0.910
ABC1212
Conserved hypothetical protein.
 
     0.809
ABC0386
Lactose ABC transporter permease.
 
   0.727
ABC0395
Lactose ABC transporter permease.
 
   0.692
ABC0398
Sugar ABC transporter substrate-binding protein.
  
     0.675
ABC3281
Sugar ABC transporter permease.
 
   0.675
ABC0317
Sugar ABC transporter permease.
 
   0.660
ABC0387
Lactose ABC transporter permease.
 
   0.637
ABC3775
Sugar ABC transporter permease.
 
   0.627
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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