STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABC1235Ribosomal-protein-serine acetyltransferase. (176 aa)    
Predicted Functional Partners:
ABC1236
Hypothetical protein.
 
     0.800
ABC0996
Ribosomal-protein-serine acetyltransferase.
  
     0.698
ABC3830
Aminoglycoside N6'-acetyltransferase.
  
     0.652
ABC1022
Ribosomal-protein-serine acetyltransferase.
  
     0.617
ABC1237
Conserved hypothetical protein.
       0.581
ABC1234
Transporter.
       0.543
ABC3319
Serine/threonine protein kinase.
 
    
 0.502
ABC0507
GNAT family acetyltransferase.
  
     0.460
ABC1280
Lysine/ornithine N-monooxygenase.
  
  
 0.452
rncS
Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
   
    0.410
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.