STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABC1241Oligopeptide ABC transporter permease. (334 aa)    
Predicted Functional Partners:
ABC1242
Oligopeptide ABC transporter permease.
 
 
 0.975
ABC1240
Oligopeptide ABC transporter substrate-binding protein.
 
 
 0.939
ABC0032
Oligopeptide ABC transporter permease.
 
 
 0.906
ABC0232
Dipeptide/oligopeptide/nickel ABC transporter permease.
 
 
 0.904
ABC2412
Oligopeptide ABC transporter permease.
 
 
 0.904
ABC4064
Oligopeptide ABC transporter permease.
 
 
 0.903
ABC0566
Oligopeptide ABC transporter permease.
 
 
 0.886
ABC1608
Oligopeptide ABC transporter permease.
 
 
 0.885
ABC3659
Oligopeptide ABC transporter permease.
 
 
 0.885
dppC
Dipeptide ABC transporter permease.
 
 
 0.870
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.