Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABC1260Stage V sporulation protein B. (444 aa)    
Predicted Functional Partners:
ABC0096
Conserved hypothetical protein.
 
  
 0.710
ABC2163
Conserved hypothetical protein.
  
     0.699
gpr
Germination protease precursor; Initiates the rapid degradation of small, acid-soluble proteins during spore germination; Belongs to the peptidase A25 family.
  
     0.682
ABC1675
Stage IV sporulation protein.
 
   
 0.678
spoIIE
Serine phosphatase stage II sporulation protein E.
  
  
 0.668
ABC0806
Conserved hypothetical protein.
  
     0.650
spoIIIAE
Stage III sporulation protein AE.
  
  
 0.633
ABC2726
Conserved hypothetical protein.
  
     0.627
spoVAF
Stage V sporulation protein AF.
  
   
 0.612
spoIIP
Stage II sporulation protein P; Septal wall dissolution protein.
  
   
 0.604
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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