STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABC1287Cytochrome d ubiquinol oxidase subunit I CydA. (445 aa)    
Predicted Functional Partners:
ABC1286
Cytochrome d ubiquinol oxidase subunit II CydB.
 
 
 0.999
sdhB
Succinate dehydrogenase iron-sulfur protein.
  
  
 0.704
sdhA
Succinate dehydrogenase flavoprotein subunit.
  
  
 0.676
sdhC
Succinate dehydrogenase cytochrome b558 subunit.
  
  
 0.665
ABC0963
Proline oxidase.
   
 
 0.559
ABC0247
Proline oxidase.
   
 
 0.557
ABC2924
NADH dehydrogenase.
 
   
 0.500
panD
Aspartate 1-decarboxylase precursor; Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine.
   
  
 0.492
ctaC
Cytochrome caa3 oxidase subunit II CoxB; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
     
 0.479
ABC2428
2-cys peroxiredoxin.
 
   
 0.474
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.