Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ABC1287Cytochrome d ubiquinol oxidase subunit I CydA. (445 aa)    
Predicted Functional Partners:
ABC1286
Cytochrome d ubiquinol oxidase subunit II CydB.
 
 0.999
sdhB
Succinate dehydrogenase iron-sulfur protein.
  
  
 0.689
sdhA
Succinate dehydrogenase flavoprotein subunit.
  
  
 0.671
sdhC
Succinate dehydrogenase cytochrome b558 subunit.
  
  
 0.635
qoxD
Cytochrome aa3 quinol oxidase subunit IV QoxD.
     
 0.596
ctaF
Cytochrome caa3 oxidase subunit IV CoxD.
     
 0.596
panD
Aspartate 1-decarboxylase precursor; Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine.
   
  
 0.577
ABC2924
NADH dehydrogenase.
 
   
 0.564
ABC0963
Proline oxidase.
   
 
 0.533
ABC0247
Proline oxidase.
   
 
 0.529
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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