STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABC1292Conserved hypothetical protein. (369 aa)    
Predicted Functional Partners:
spo0B
Stage 0 sporulation protein B.
  
    0.716
ABC1291
Conserved hypothetical protein.
  
     0.610
ABC1293
Phosphoglycerate mutase; Belongs to the phosphoglycerate mutase family.
       0.610
ABC0097
Conserved hypothetical protein.
  
    0.568
ABC3902
Conserved hypothetical protein.
  
     0.533
ABC2531
Conserved hypothetical protein.
 
     0.525
ABC3848
Hypothetical protein.
  
     0.503
ABC2255
Flagellar biosynthetic protein.
  
     0.481
ABC2905
Conserved hypothetical protein.
  
     0.472
tyrZ
tyrosyl-tRNA synthetase 2; Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two- step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr); Belongs to the class-I aminoacyl-tRNA synthetase family. TyrS type 2 subfamily.
   
    0.457
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.