ABC1300 protein (Bacillus clausii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ABC1300

S-adenosylmethionine (SAM)-dependent methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. (471 aa)

Predicted Functional Partners:

ABC1301

0.570

rsmI

0.550

ABC1299

0.524

ABC2317

0.508

ABC0511

0.507

pheT

0.500

ABC0116

0.475

guaA

0.439

ABC2681

0.431

ABC3508

0.427

Your Current Organism:

Bacillus clausii

NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABC0116	ABC1300	ABC0116	ABC1300	tRNA-dihydrouridine synthase; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family.	S-adenosylmethionine (SAM)-dependent methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.	0.475
ABC0116	ABC2317	ABC0116	ABC2317	tRNA-dihydrouridine synthase; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family.	RNA-binding protein Sun; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.	0.501
ABC0116	guaA	ABC0116	ABC0936	tRNA-dihydrouridine synthase; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family.	GMP synthetase; Catalyzes the synthesis of GMP from XMP.	0.694
ABC0511	ABC1300	ABC0511	ABC1300	Hypothetical protein.	S-adenosylmethionine (SAM)-dependent methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.	0.507
ABC1299	ABC1300	ABC1299	ABC1300	Conserved hypothetical protein.	S-adenosylmethionine (SAM)-dependent methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.	0.524
ABC1300	ABC0116	ABC1300	ABC0116	S-adenosylmethionine (SAM)-dependent methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.	tRNA-dihydrouridine synthase; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family.	0.475
ABC1300	ABC0511	ABC1300	ABC0511	S-adenosylmethionine (SAM)-dependent methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.	Hypothetical protein.	0.507
ABC1300	ABC1299	ABC1300	ABC1299	S-adenosylmethionine (SAM)-dependent methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.	Conserved hypothetical protein.	0.524
ABC1300	ABC1301	ABC1300	ABC1301	S-adenosylmethionine (SAM)-dependent methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.	Microcin immunity protein.	0.570
ABC1300	ABC2317	ABC1300	ABC2317	S-adenosylmethionine (SAM)-dependent methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.	RNA-binding protein Sun; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.	0.508
ABC1300	ABC2681	ABC1300	ABC2681	S-adenosylmethionine (SAM)-dependent methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.	23S rRNA methyltransferase; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.	0.431
ABC1300	ABC3508	ABC1300	ABC3508	S-adenosylmethionine (SAM)-dependent methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.	rRNA adenine N-6-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family.	0.427
ABC1300	guaA	ABC1300	ABC0936	S-adenosylmethionine (SAM)-dependent methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.	GMP synthetase; Catalyzes the synthesis of GMP from XMP.	0.439
ABC1300	pheT	ABC1300	ABC2679	S-adenosylmethionine (SAM)-dependent methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.	phenylalanyl-tRNA synthetase beta chain; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.	0.500
ABC1300	rsmI	ABC1300	ABC0057	S-adenosylmethionine (SAM)-dependent methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.	Corrin/porphyrin methyltransferase; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.	0.550
ABC1301	ABC1300	ABC1301	ABC1300	Microcin immunity protein.	S-adenosylmethionine (SAM)-dependent methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.	0.570
ABC2317	ABC0116	ABC2317	ABC0116	RNA-binding protein Sun; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.	tRNA-dihydrouridine synthase; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family.	0.501
ABC2317	ABC1300	ABC2317	ABC1300	RNA-binding protein Sun; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.	S-adenosylmethionine (SAM)-dependent methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.	0.508
ABC2317	ABC2681	ABC2317	ABC2681	RNA-binding protein Sun; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.	23S rRNA methyltransferase; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.	0.492
ABC2317	ABC3508	ABC2317	ABC3508	RNA-binding protein Sun; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.	rRNA adenine N-6-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family.	0.552

page 1 of 3

Server load: low (14%) [HD]

Permalink

Network

Neighborhood

Experiments

Co-occurrence

Textmining

Co-expression

Databases

Fusion

© STRING Consortium 2026

Credits

Access

Info

About