Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABC1305Conserved hypothetical protein. (106 aa)    
Predicted Functional Partners:
recX
Regulatory protein RecX; Modulates RecA activity; Belongs to the RecX family.
  
  
 0.840
ABC2397
Conserved hypothetical protein.
  
     0.772
ABC2946
Conserved hypothetical protein.
  
     0.767
ABC2886
Conserved hypothetical protein.
  
     0.755
ABC0230
Conserved hypothetical protein.
  
     0.740
ABC2455
Conserved hypothetical protein.
  
     0.740
ABC3885
Conserved hypothetical protein.
  
     0.735
ABC1323
Conserved hypothetical protein.
  
     0.718
ABC2400
Conserved hypothetical protein.
  
     0.712
ABC2923
Conserved hypothetical protein.
  
     0.710
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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