STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABC1308Conserved hypothetical protein. (326 aa)    
Predicted Functional Partners:
ABC2771
Conserved hypothetical protein; Belongs to the UPF0354 family.
  
     0.755
ABC2884
MutT/nudix family phosphohydrolase; Belongs to the Nudix hydrolase family.
  
     0.670
rsbU
Indirect positive regulator of sigma-B activity.
  
    0.666
pcrB
PcrB protein; Prenyltransferase that catalyzes in vivo the transfer of the heptaprenyl moiety of heptaprenyl pyrophosphate (HepPP; 35 carbon atoms) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P), producing heptaprenylglyceryl phosphate (HepGP). This reaction is an ether-bond- formation step in the biosynthesis of archaea-type G1P-based membrane lipids found in Bacillales.
  
     0.652
ABC1309
A/G-specific adenine DNA glycosylase; Adenine glycosylase active on G-A mispairs.
       0.600
ABC1310
3-oxoacyl-[acyl-carrier-protein] reductase.
       0.600
sigB
DNA-directed RNA polymerase general stress sigma factor sigma-B; Belongs to the sigma-70 factor family.
  
     0.591
ABC2381
Conserved hypothetical protein; Belongs to the UPF0342 family.
  
     0.586
ABC2189
Conserved hypothetical protein; Belongs to the UPF0342 family.
  
     0.583
fer
Ferredoxin.
  
     0.574
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.