STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABC1321Conserved hypothetical protein. (98 aa)    
Predicted Functional Partners:
ABC1320
Conserved hypothetical protein; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
  
    0.768
ABC1319
Bacterioferritin comigratory protein BCP.
       0.756
perR
Fur family transcriptional regulator; Belongs to the Fur family.
  
    0.571
gsaB
Glutamate-1-semialdehyde 2,1-aminomutase.
       0.543
ABC1866
Conserved hypothetical protein.
  
     0.528
ABC2561
Conserved hypothetical protein.
 
     0.463
ABC2935
Conserved hypothetical protein.
  
     0.461
ABC2036
Tellurite resistance protein; Belongs to the TelA family.
  
    0.455
def
Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.
   
    0.438
ABC1739
Conserved hypothetical protein.
  
     0.426
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.