STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABC1325Phage-related integrase/recombinase; Belongs to the 'phage' integrase family. (321 aa)    
Predicted Functional Partners:
clpQ
ATP-dependent protease HslVU (ClpYQ) peptidase subunit; Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery.
  
  
 0.833
spoIIIE
DNA translocase stage III sporulation protein E; Belongs to the FtsK/SpoIIIE/SftA family.
 
  
 0.750
ABC2769
DNA translocase; Belongs to the FtsK/SpoIIIE/SftA family.
 
  
 0.748
spo0J
Stage 0 sporulation protein J; Antagonist of Soj; Belongs to the ParB family.
 
  
 0.586
clpY
ATP-dependent protease HslVU (ClpYQ) ATPase subunit; ATPase subunit of a proteasome-like degradation complex; this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis.
  
  
 0.579
comFC
Late competence protein ComFC.
   
    0.570
rpmE
50S ribosomal protein L31.
  
 
 
 0.534
ABC2182
Phage integrase family site-specific recombinase; Belongs to the 'phage' integrase family.
  
     0.513
recJ
Single-strand DNA-specific exonuclease.
 
  
 0.511
noc
Transcriptional regulator; Effects nucleoid occlusion by binding relatively nonspecifically to DNA and preventing the assembly of the division machinery in the vicinity of the nucleoid, especially under conditions that disturb the cell cycle. It helps to coordinate cell division and chromosome segregation by preventing the formation of the Z ring through the nucleoid, which would cause chromosome breakage. Belongs to the ParB family.
 
  
 0.506
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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