STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABC1413Selenocysteine synthase [seryl-tRNASer selenium transferase]. (370 aa)    
Predicted Functional Partners:
ABC1414
Conserved hypothetical protein.
 
    0.971
ABC1407
Dihydroorotase.
 
  
 0.965
ABC1411
Conserved hypothetical protein.
 
     0.947
ABC1412
Conserved hypothetical protein.
 
     0.947
ABC1410
Conserved hypothetical protein.
 
    0.935
ABC1409
Conserved hypothetical protein.
 
     0.934
ABC1408
Conserved hypothetical protein.
 
     0.933
ABC1406
BglG family transcriptional antiterminator.
 
     0.924
serS
seryl-tRNA synthetase; Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L- seryl-tRNA(Sec), which will be further converted into selenocysteinyl- tRNA(Sec).
     
 0.916
ABC1428
seryl-tRNA synthetase.
     
 0.916
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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