STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABC1415D-threo-aldose 1-dehydrogenase. (328 aa)    
Predicted Functional Partners:
ABC3225
Fructokinase.
     
  0.800
ABC3956
General stress protein 17M.
  
    0.550
ABC1701
Conserved hypothetical protein.
  
     0.488
ABC1786
Conserved hypothetical protein.
  
    0.487
ABC3416
Conserved hypothetical protein.
  
     0.477
ABC2044
Thioredoxin.
  
    0.471
ABC2969
Oxidoreductase.
 
     0.432
ABC2153
Stage V sporulation protein K.
  
 
   0.408
ABC0794
Conserved hypothetical protein.
  
    0.406
ABC2695
Oxidoreductase.
 
     0.400
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.