Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
gspALipopolysaccharide glycosyltransferase. (274 aa)    
Predicted Functional Partners:
ABC1852
Glycosyltransferase.
 
  
 0.693
ABC1438
Conserved hypothetical protein.
 
     0.581
ABC3956
General stress protein 17M.
   
    0.540
gsiB
General stress protein B.
   
  
 0.486
ABC1868
5,10-methylenetetrahydrofolate reductase.
  
    0.485
ABC0513
Glycosyltransferase.
  
  
 0.458
ABC2573
N-dimethylarginine dimethylaminohydrolase.
   
    0.442
ribA
Riboflavin biosynthesis protein RibA; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the N-terminal section; belongs to the DHBP synthase family.
       0.439
ABC3168
Hypothetical protein.
  
  
 0.423
ABC3983
Hypothetical protein.
  
     0.405
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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