STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cstACarbon starvation-induced protein. (541 aa)    
Predicted Functional Partners:
ABC1451
Hypothetical protein.
       0.789
gabD
Succinate-semialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
    0.634
polC
DNA polymerase III alpha subunit PolC; Required for replicative DNA synthesis. This DNA polymerase also exhibits 3' to 5' exonuclease activity.
     
 0.556
mmgD
Citrate synthase; Belongs to the citrate synthase family.
   
  
 0.552
citZ
Citrate synthase II; Belongs to the citrate synthase family.
   
  
 0.552
citA
Citrate synthase I; Belongs to the citrate synthase family.
   
  
 0.552
csrA
Carbon storage regulator CrsA; A translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Usually binds in the 5'- UTR at or near the Shine-Dalgarno sequence preventing ribosome-binding, thus repressing translation. Its main target seems to be the major flagellin gene, while its function is anatagonized by FliW.
      
 0.542
ABC3531
Sodium:proline symporter; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
 
    0.528
ABC1485
Sodium:proline symporter; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
 
    0.527
ABC0544
Sodium:pantothenate symporter; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
 
    0.520
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.